Some quantites about the data:
## dim(person) = 2000 62
## dim(sequences_meta) = 1000 41
## Are 'person' IDs unique ?
## TRUE
## Are 'sequences_meta' IDs unique ?
## TRUE
## The proportion of US-born people in the dataset is:
## Foreign USA
## Count 372.0 1628.0
## Percent 18.6 81.4
## The proportion of infected people after 2013 is:
## Before 2013 (included) After 2013
## Count 1802.0 198.0
## Percent 90.1 9.9
Below, we focus on HIV infected individuals who are either:
## Frequency: 84.7 % of the dataset.
## Count: 1694
## King County Frequency in Washington State: 70.84 %
The plot below shows new diagnosis every two years in Washington State.
Mainly, we notice that new diagnosis in MSM population decreases over the time. Nevertheless, the foreign MSM population increases until 07-08 and it stays constant until now. Next, the heterosexual population slightly decreases and again the foreign subpopulation seems to increase.
Number of people diagnosed with HIV, adjusting for reported deaths.
Number of people diagnosed with HIV, adjusting for reported deaths.
Last five years: Transmissions by ethnicity and origin.
Percent of alived people with HIV by county. Only most represented counties are considered.
Birth country.
Number of people living with HIV and registered by county.
Number of people living with HIV and registered by county.
Percent of MSM diagnosis the last five years by county.
Percent of IDU diagnosis in last five years by county.
Percent of US HSX diagnosis in last five years by county.
Percent of foreign-born HSX diagnosis in last five years by county.
## Proportions of transmissions:
## Main transmission: 98.47%
## Other transmission: 1.53%
Age at HIV diagnosis.
## Warning: Removed 6 rows containing non-finite values (stat_ydensity).
## Warning: Removed 6 rows containing non-finite values (stat_boxplot).
Year of first ART.
Only about the person infected the last five years.
Frequency of people starting ART by origin and ethinicity.
Frequency of people starting ART by age and sexual orientation.
Cumulative proportion of individuals from King County who started ART, by tranmission and for diagnosis in last five years.
Cumulative proportion of individuals from King County who started ART, by ethnicity and for diagnosis in last five years.
Cumulative proportion of individuals from King County who started ART, by age and for diagnosis in last five years.
Cumulative proportion of individuals from Washington State who started ART, by county and for diagnosis in last five years.
Cumulative proportion of individuals from Washington State who started ART, by diagnosis year and for diagnosis in last five years.
In this Section we consider persons for who King County is the:
## Frequency: 60 % of the dataset.
## Count: 1200
Number of new diagnosis every two years in King County.
Number of new diagnosis every two years in the other counties of Washington State.
## There are not non-KC cases in this dataset.
Number of people diagnosed with HIV, adjusting for reported deaths.
Number of people diagnosed with HIV, adjusting for reported deaths.
Last five years: Transmissions by ethnicity and origin.
Percent of alived people with HIV by county. Only most represented counties are considered.
## Proportions of transmissions:
## Main transmission: 98.67%
## Other transmission: 1.33%
Age at HIV diagnosis for US born people.
## Warning: Removed 5 rows containing non-finite values (stat_ydensity).
## Warning: Removed 5 rows containing non-finite values (stat_boxplot).
Age at HIV diagnosis for migrants.
## Warning: Removed 5 rows containing non-finite values (stat_ydensity).
## Warning: Removed 5 rows containing non-finite values (stat_boxplot).
Year of first ART.
Only about the person infected the last five years.
Frequency of people starting ART by origin and ethinicity.